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Heatmap of Kelp Selection Overlap

A lot of what we’ll be working on to determine area of beds are heatmaps of users selecting a pixel as kelp. This sounds somewhat abstract, so I wanted to operationalize it for you with some images. Let’s start with a single image from Floating Forests chosen because it has been flagged as having kelp. It has 13 classifications, so, one more and it is ‘complete’ – unless we decide to lower the classification threshold. The image is

Demo image

So, what would it look like if we overlaid all of the outlines of users outlining kelp from the other day on the image?


You can see, to some extent, folk circling the same areas, and their varying degrees of specificity. What does this result in if we want a heatmap of number of users selecting each pixel on which to do our analysis? Well, here you go!

Selection heatmap with background image

Next time, a more quantitative look.

Variation in Kelp Selection is Beautiful

For the next post or three, I’m going to talk about what I see when I look at the data from one image. In the coming weeks, I hope to get at putting together bigger spatial or temporal results. But for the moment, I’m going to begin with what we see when we look at user classifications of one image. I’m going to begin with something beautiful – human variation.

This is the variability from person to person that we see in circling the same set of beds. I just find it striking and lovely.

User Variation in Selection

Kelp Forest on Artificial Reef

If you have been classifying images in California over the past few months, you may have come across an array of square kelp forests and wondered, “How did those get there?!” The story behind this amazing man-made kelp forest involves a nuclear power plant, a state agency, and some remarkable researchers.

Artificial reef modules in the lower right corner!

In the early 1970’s the San Onofre Nuclear Generating Station (SONGS) proposed adding two additional reactor units to increase its power generation capacity. The California Coastal Commission (CCC) granted the permit in 1974, but as a condition of the expansion a Marine Review Committee was established to direct impact assessment studies on nearby coastal ecosystems that could be negatively affected by the additional reactor units. As a result of these studies, the CCC added new conditions for the mitigation of identified impacts, one of the conditions was the construction of an artificial reef to replace kelp bed resources lost as a result of SONGS’ cooling water discharge.



The additional reactors are cooled by a single pass seawater system. As the warm water is discharged back to the environment it is cooled with additional seawater using diffusers. This process draws in ambient seawater at rate about 10x the discharge flow and is swept up along with sediments, which are transported offshore. This warm, sediment-laden plume led to substantial reductions in the abundance and density of kelp plants within the San Onofre kelp bed, as well as reductions in many kelp bed fish and invertebrate species.

Locations of artificial reef modules, SONGS, and San Onofre kelp forest including sediment plume.

The mandated artificial reef had to be large enough to sustain 150 acres of kelp forest as compensation for the loss of 179 acres within the San Onofre kelp bed. This process began with a 5-year experimental phase that entailed building a smaller 22.4 acre reef to determine the substrate types and configurations that would support a giant kelp forest and associated biota during the later mitigation phase. The plan involved testing eight different reef designs that varied in substrate composition, substrate coverage, and the presence of transplanted kelp. Reef designs were implemented as 56 (40 m x 40 m) modules (7 replicates of the 8 designs), with construction completed in 1999. These are the squares seen on your images! Results obtained from monitoring the 5-year experiment showed a near-equally high tendency of all reef designs to meet the performance standards established for the mitigation phase, and the final recommendation was to build out the reef using low relief quarry rock or concrete rubble that covered between 42-86% of the bottom.


Dr. Wheeler North

Construction of the full artificial reef was completed in 2008 with the use of approximately 126,000 tons of boulder-sized quarry rocks, deposited into 18 polygons. When combined with the experimental reef, these areas provide 174.4 acres of hard substrate for the growth of giant kelp and associated species. The reef was named after the late Dr. Wheeler North, a pioneer in the understanding of kelp forest ecology. The coastal development permit to operate SONGS requires ongoing monitoring of the artificial reef, which is led by UCSB researchers Dan Reed, Steve Schroeter, and Mark Page. These efforts evaluate whether the reef is meeting performance standards, and if necessary, determining why standards are not being met and recommending remedial measures.


Artificial reef (mitigation reef + experimental modules) covered with giant kelp!!!

Another amazing story behind the green blobs on your computer screen!

For more information about the Wheeler North Reef click here!

Bienvenidos a los Bosques Flotantes

Estamos felices de anunciar que la pagina de Bosques Flotantes se encuentra en castellano (sigue con este enlace

Las grandes macroalgas pardas o también llamadas “kelp” son especies que generan hábitat amparando a una de las comunidades mas diversas del planeta. Estas algas se distribuyen en todas las costas rocosas templadas. Presentes en casi todos los mares, estas especies varían en tamaño y forma donde algunos kelp como Macrocystis pyrifera pueden alcanzar los 30 metros de largo mientras otros solo alcanzan un metro de altura como aquellos encontrados en el Mediterráneo. En las costas del Pacifico en Mexico por ejemplo en las Islas San Benito, Baja California se encuentran unos de los bosques con mayor grado de conservación del Pacifico. Todas estas especies forman extensas praderas y pueden llegar mas allá de los 70 m de profundidad como el caso de Laminaria en las costas del Mediterráneo.

El proyecto “Bosques Flotantes” alberga imágenes registradas por satélites (Landsat) desde los años 80 y nos permiten visualizar estos bosques, ¡desde el espacio! Pero el análisis de fotografías requiere de tiempo, y el proceso de identificación de imágenes es intensivo. Para solucionar este problema lanzamos el proyecto de ciencia ciudadana para que nos ayudes a participar en el análisis de imágenes. Hemos lanzado este proyecto en Australia y California donde ya llevamos mas de 1 millón de imágenes revisadas por diferentes usuarios de internet. Ahora con la traducción al castellano de esta plataforma en línea esperamos ampliar el rango de imágenes a las regiones donde ocurren estas plantas, empezaremos en Baja California (para que puedas ver estas praderas de las islas San Benito) y luego lanzaremos imágenes de las costas del Perú, recorriendo toda la costa Chilena, hasta el sur de Argentina. Este proyecto de ciencia ciudadana requiere de tu ayuda para poder avanzar mas rápido en la visualización y análisis de las costas templadas del planeta.

Have a Kelpy Holiday

From all of us here at Floating Forests, hope you’re having a great holiday! And after some time with the tree, nog, or after the menorah has burned down, join the over 3000 other folk out there and help us hunt down some kelp!

And thanks to FF Fan Jenn Burt for an image that sums it all up.


Color Corrected Images Back!

Welcome back to Floating Forests! We’ve had a few snafus that have been lowering the image quality that folk have mentioned, and we’ve got them locked down! What issues, some of you might be saying? During an image upload, something got snagged in the color translation, so images were coming out looking dark and red. Some users (thanks, artman40!) were quite skilled at seeing the kelp anyway. Hats off to you!

Yeah, that's not an easy one. Interestingly, if you selected the image area, the scene pops out clearly.

Yeah, that’s not an easy one. Interestingly, if you selected the image area, the scene pops out clearly.

We’re actually kind of excited about this, as it will give us a second validation dataset so we can really calibrate user views of images under different conditions. Some of the images that we have up there have been previously been viewed by research assistants (undergrads) at UC Santa Barbara. Part of our analysis of the data involves calibrating against any noise of different viewers looking at the same image. Now we’ll have three different classifications types for a set of the images – undergrad RAs, Floating Forest users, and Floating Forest users with a color-skewed dataset. It’s going to help us reduce error of estimation of kelp bed size and get better quality data in the end as we build better models of the data. There’s actually a nice article on just this topic in last month’s issue of Methods in Ecology and Evolution (one of my favorite journals!) (what, don’t look at me that way, I’m a scientist!)

A number of folk have asked us about the color skewing, and also asked us about the algorithm we use to select images. Stay tuned, as we’re working with Zooniverse to release the code they use to select images, and then anyone who is interested in having at it – either for their own applications (say, spotting coral reefs in the tropics, and needing to subset out only coastal images) or who is interested in trying to make our process better (and reduce the number of land images while not losing coastline images). We’d love to collaborate with more folk out there!

Evaluating mutualism between fish and large brown macroalgae

We just finished a three year project in which we developed a series of mensurative and manipulative experiments on different sites along the Central-Northern Coast of Chile. Study sites on the project where selected under different parameters such as open access areas (meaning that anyone can go and get fish and seafood) and protected areas called areas of management and exploitation of benthic resources (AMEBRs) where there are fishermen who care for benthic resources and only they can catch them. To measure the state of kelp forest and the relationship between the brown seaweed and fish, 4 scientific divers with various tasks recorded and monitored kelp forests of these sites twice a year for three years.

a) kelp in good condition in MEABRs and b) in open access for fishing sites. Photos A. Pérez-Matus

a) kelp in good condition in MEABRs and b) in open access for fishing sites. Photos A. Pérez-Matus

The results obtained by these divers were very interesting, the AMERBs sites have more adult and juvenile brown macroalgae per unit of area, and adult plants are larger, because they have more foliage. At these sites there is also a greater number and biomass of fish, all in comparison with the forest of brown macroalgae of free access sites for fisheries. Free access sites had a higher number of grazers like sea urchins and snails and small herbivores that eat brown macroalgae. To evaluate these results in field, experiments where set up to estimate the growth of the blades of brown macroalgae Lessonia trabeculata (see figure 1a) in the presence and absence of herbivorous snails measuring over months. The seaweed in the presence of this snail not only stopped growing, but also declined (see figure 1b). The next step was to experiment in the laboratory the feeding behavior of the herbivores in the presence and absence of potential predators (fish) for this aquarium with herbivores and macroalgal tissues were used. The experiment showed that snails fed less in the presence of fish. The mere presence of fish caused snails to climb to the top of the aquarium and spend more time there. Then it was confirmed that fish generate indirect positive effects on the brown macro algae.

Other positive direct effects of fish on brown macroalgae were also evaluated. In the laboratory, it was confirmed that in the presence of fish and filter feeders such as mussels, macroalgae are kept in better condition. They do not lose their blades (leaves) and grow faster than seaweed that only had the presence of filter feeders. The nutrients that fish generate as particulate organic material are dissolved by the filtering procedure of mussel then are used by macroalgae. It turned out that the seaweed benefits from the nutrients provided by the fish and accelerate their growth.

Figure showing the experiments herbivory on reproductive tissue of the kelp Lessonia tabeculata by the herbivore “jerguilla”, Aplodactylus punctatus: a) experimental mesocosms; b) delivered algae as food; c) indicates consumption and bites by adults jerguillas. Pictures from Catalina Ruz.

Figure showing the experiments herbivory on reproductive tissue of the kelp Lessonia tabeculata by the herbivore “jerguilla”, Aplodactylus punctatus: a) experimental mesocosms; b) delivered algae as food; c) indicates consumption and bites by adults jerguillas. Photos from Catalina Ruz.

The brown macroalgae generate different services to the fish species, providing habitat for early stages of fish and food indirectly (many fish feed on small crustaceans such as amphipods, gastropods, isopods inhabiting kelp) and directly, as their own tissues are food for herbivorous fish. Herbivorous fish can consume algal reproductive tissues. In these tissues spores live; spores are the seeds of macroalgae. We found that these reproductive tissues that were consumed by fish herbivores may reduce the epiphytic (seaweed on tissues) and chemical load that are produced in these tissues (to deters small herbivores). The seeds of the algae can be released more quickly once passes through the digestive tract of fish and may supply more nutrients for growth. We also found that the seeds are viable and germinated with the same speed as those of reproductive tissue control. Herbivorous fish can be vehicles that disperse seeds macroalgae as these spores have very little mobility (see the photos of the experiments).

This research project may generate different conclusions. One is that as the brown macroalgae are important habitat and food for fish species. The fish in turn provide benefits to macroalgae. The importance of fish is notorious and is expressed at different spatial scales (1 m to km) where the presence of fish and other agents can modify the landscape. We can conclude that in the absence of fish, macroalgae lose their condition (assessed as foliage and growth), which could bring significant consequences for artisanal and recreational fishing. Also, there are no management plans in Chile led to the fish. Considering the importance of these coastal environments, consequences will be negative to kelp ecosystems if limitations for catching reef fish in Chile do not apply.

Open Ocean Kelp Forest?

Talk about serendipitous discoveries! Superuser artman40 recently posted an image on the discussion boards with a question, is this kelp out in the middle of the ocean?


The answer is YES! There is a kelp forest located about 100 miles off the coast of San Diego, CA, on a seamount known as the Cortez Banks. Many of you may have already heard about this place as it is one of the premier sites for big wave surfing in the world, with waves over 80 ft high! Check out this video:

While this was a surprise for us, spear fishers and sea lions have known about this spot for years! Check out this video where you can clearly see giant kelp:

With this new information we can begin to look more closely at this very unique kelp forest and ask interesting questions like: How often is this forest present? How does kelp get there? How are ocean circulation patterns affecting kelp’s presence and growth?

And we couldn’t have done it without YOU, our awesome citizen scientists! Great job FloatingForests team!

Polish Floating Forests!

No, there’s no giant kelp in Poland (sorry) BUT a generous volunteer has translated our entire site into Polish! So check it out by going to the site, clicking the globe, and selecting Polski, and then ODKRYWAJ PŁYWAJĄCE LASY!

Screen Shot 2014-08-29 at 1.36.53 PM

The Floating Forests Origin Story

Every great thing in this world has an origin story, right? Here’s ours.

Years ago, I was a postdoc at the Santa Barbara Coastal Long-Term Ecological Research Site (SBC LTER) working on the links between waves, kelp, and food webs. I had this problem. Big waves came through in the winter and removed a lot of kelp. Only, we only had divers going out in the summer, by which time kelp had often recovered, so I couldn’t estimate how much damage had been done.

Enter the brilliant Kyle Cavanaugh. As a grad student, he was pushing the limits on how we use satellite imagery for marine science. He’d devised a way to use imagery from Landsat, stretching back into the 1980s, to see giant kelp forest canopies from space. Better still, as every area around the earth was photographed about twice a month, this meant that he could see the forests I was analyzing right after storms hit them.

Fig 1 from Kyle's Original work on kelp & Landsat

Fig 1 from Kyle’s Original work on kelp & Landsat

So, we struck up a collaboration to use the Landsat data he was collecting (paper here) to bring in the wave story. It was fantastic, and led to a wonderful collaborative paper.

And that could have been the end of it.

Except…there was this niggling thing. Landsat has images of the whole globe. And Giant Kelp isn’t just in California, but rather it’s found in areas all over the planet. Could we look at giant kelp across the planet?

As other members of the lab Kyle was in moved forward, they slowly expanded the dataset to include Baja, Northern California, and more. Why slow? Well, turns out, computers can’t just scan an image and tell you where the kelp is. Kelp looks like a lot of things in those pictures – like parts of the land, like clouds, like sea foam. But, to the human eye, it has some pretty distinct patterns in where it is and how it clumps together. The Siegel lab had setup a great pipeline of undergraduates who looked over the images, circled where kelp was, and then sent it back to grad students and computers to determine how much was there.

It took years just to get California. The globe seemed impossible.

A few years later, this came up while Kyle and I were seated in a room of amazing kelp forests scientists. We were at the National Center for Ecological Analysis and Synthesis for a working group on kelp forests and climate change. One of the tasks we had assigned ourselves was to build a global database of all of the kelp forest monitoring data out there. We found a number of wonderful datasets – some stretching into the 1970s, and one even into the 1950s. But all of these sets were limited to just a handful of sites. And there weren’t many of them.

What to do?

The NCEAS Kelp Forests and Climate Change working group

The NCEAS Kelp Forests and Climate Change working group

A few project members brought up Kyle’s Landsat data, but, expanding to the globe seemed daunting – until we realized that there might be a way to harness the power of the Crowd. I’d recently read Nielsen’s Reinventing Discovery where he talked about a project called Galaxy Zoo. In Galazy Zoo, astronomers had folk look at pictures of hundreds of thousands of galaxies and help them classify them into types. Along the way, citizen scientists not only had a good time, but even made some discoveries of types of celestial objects never before recorded.

Why not tap the power of folk interested in our oceans? Maybe we could provide images of coastlines that many people had never seen – to set them up as explorers of a potentially kelpy world, and help us get data along the way? People could see not only the kelp forests that might be lurking in their back yard, but discover features and forests in places we’d hardly ever been able to look before.

So, we emailed Zooniverse. It wasn’t their regular time to receive new submissions, but they wrote back right away, very excited. We put together a crackerjack team of scientists from our working group, and submitted an application to be a project, and as the next round swung around, they selected us to take part! We built a small science team from our larger network (who is still pretty active in the whole process!), began conversations with the Zooniverse team after going to their marvelous conference in Chicago, and we were off!

From that point on, it’s been smooth sailing to the great site you see now letting you sail the seas of Floating Forests (from space!)