If you are reading this post, it means the Floating Forests relaunch is live – thanks to all of your hard work we were able to get through over 20 years worth of data! Special thanks to the beta testers who gave us tons of feedback on the new site. We are busy on our end calibrating the results from the first round of data and it’s looking great. I don’t want to spill the beans on a future blog post, but working with this dataset has already led us down a new path with some unexpected collaborators!
As exciting as calibration models are, today’s main event is even better! Welcome to Floating Forests 2.0! We have been hard at work with Zooniverse to make your experience even better. In addition to a shiny new website, we’ll be taking you to a new part of the world – The Falkland Islands!
The Falkland Islands are an often overlooked ecological treasure. From land they appear a windswept grassland dominated by birds and insects, one of only a handful of places on Earth with no native trees. The coastal waters, however, are a different story altogether. You’ve probably guessed where this is going – kelp! Lots of kelp! The expansive kelp forests ringing the islands more than make up for the lack of terrestrial trees. Kelp forests around the world are a haven for wildlife, and these are no different. They are an irreplaceable resource for elephant seals, fur seals, sealions, multiple penguin species, two types of dolphins, and a huge number of fish and invertebrates. A recent report1 has listed lack of awareness and information as one of the biggest threat to the Falkland Islands’ marine biodiversity, so lets generate data and get aware!
Before you dive in, lets take a quick tour of the new website – if you’re familiar with our old site you’ll already know the drill, but some things have been moved around!
As you can see, there are two buttons at the bottom. “Classify Kelp” brings you to our shiny new version of the kelp tracing you all know and love. “Kelp presence/absence” you to a new feature- a simplified, mobile friendly task that can be done quickly and easily! This allows anyone who wants to check out the project to do so even if they don’t have access to a full computer. On the research side of things it allows us to squeeze every last drop of data out of these satellite images. To make a long story short, images from different satellites are different, and these differences make it somewhat difficult to automate a filter that boots out bad images. Just like with kelp classifications, our brains are much more useful here than computers. Once enough people have tagged an image as “kelp”, into the main workflow it goes to be classified!
Across the top, you will see a number of headings.
About: Learn about kelp, the project, and the team behind the research!
Classify: Get right to the action and start classifying kelp.
Talk: This links to our talk forum where you can discuss particular images, ask science questions, get technical help, and more! We will be very active here, so don’t hesitate to post!
Collect: More on this later, but this is where collections of images are found.
Recents: Link to your most recent classifications.
Blog: Direct link to the blog you are currently reading.
The classification should feel pretty familiar. The field guide tab on the far right has been overhauled and contains many examples of phenomena you could find in these images – refer to it often! It is constantly being updated, and if you have a suggestions for additions, let us know in talk!
Beneath the image are three buttons.
From the left:
Metadata: Click this to view metadata (location, time/date, satellite number), as well as a link to the image on google maps.
Favorite: Click this to add the image to your favorites, allowing you to quickly find it again.
Collect: Similar to adding an image to your favorites, you can add an image to a collection. This way we can collaboratively sort through images, keeping track of those that contain loads of kelp, cities, or any other identifiable feature.
Once you complete an image and have clicked the green “Done” button, you will see the following information:
Here you will see a summary of the number of patches you marked, as well as the blue “Talk” button. If you had any questions about the image, this button will create a discussion thread linked back to the image. Use this space to ask the science team any questions you might have about the image. Don’t be shy, we love to talk!
In addition to these front-end changes, there have been some under-the-hood updates as well that make it much easier for us to add images or collections and even create new workflows – stay tuned for future happenings with these features, but for now go check out the new site!
- Otley H. Falkland Islands Species Action Plan for Cetaceans 2008-2018.; 2008.
Hello! You may have noticed that things have slowed down on the website. To make a long story short, thanks to all of your help we are down to the last handful of images from California and Tasmania! We have been busy cleaning the data up and getting it ready to go. This milestone has given us a chance to reflect on the first phase of the project and to get ready for some exciting next steps – more on this later!
In January, science team members Jarrett Byrnes, Kyle Cavanaugh, and Isaac Rosenthal traveled to Chicago to meet with the Zooniverse team. We were hosted at the amazing Adler Planetarium, and had an unbelievable week of planning and collaboration (and eating!). By getting the science and development teams into the same room, we were able to work through a few issues that have been nagging the project since its inception, fixing some geo-referencing issues and streamlining the post-processing of the data (in other words, what happens to the data after the kelp is classified). It was truly amazing to spend a week surrounded by talent from so many disciplines, ranging from educators to back-end web developers. I think I speak for all of us when I say that it was a unique and deeply inspiring experience!
While still under construction, hopefully most of this is a familiar sight. Our goal with this relaunch is to make YOUR jobs easier! The tracing tool has been upgraded, and we will be able to spruce up the field guide. The under-the-hood flexibility of the new system is incredible and leaves the future of Floating Forests wide open. Custom datasets and modular workflows mean that the sky is the limit! Something that I am personally excited about is the opportunity to use these tools to ask new questions, broadening horizons for research and education. This relaunch will also feature an overhauled talk section so that we can continue to communicate with all of you!
Stay tuned for more information as we begin beta testing of the new website!
Last week I had the opportunity to take part in a citizen science forum organized by the White House. It was inspiring to see how committed the White House is to harnessing the power of citizen science. A number of exciting announcements were made during the event. For one, the Federal Citizen Science and Crowdsourcing Toolkit was officially released. This toolkit, developed with the support and collaboration of over 25 federal agencies, provides step-by-step instructions, case studies, and other resources to help scientists use citizen science in their research. As you might imagine, Zooniverse projects are well represented in the successful case studies section! Then John Holdren, the Director of the Office of Science and Technology Policy, gave a talk where he announced the release of a memorandum promoting the use of citizen science by Federal Agencies. Towards the end of the forum Senator Chris Coons (D-DE) announced a new bill authorizing citizen science and crowdsourcing. This bill is co-sponsored by Senator Steve Daines (R-MT), making it bi-partisan! During his talk Senator Coons described how he and his family were citizen scientists themselves and have spent many evenings collecting data for a wide variety of different Zooniverse projects! So next time you are chatting with someone on Talk, know that he or she could very well be a senator or representative. Perhaps even President Obama has a Zooniverse account?
In between these exciting announcements there were panels on Community Science Leaders, Oceans and Coasts, Democratized Tools, Water and Agriculture, and Communities and Health. A number of really exciting citizen science projects were highlighted during these panels. These ranged from investigations of the impact of aggressive policing to surfboards that collect oceanographic data to the development of methods for utilizing indigenous traditional knowledge to our own Floating Forests! You can watch the entire forum here.
I had the honor to serve on the Oceans and Coasts panel with some HUGE names in the marine science world: Dr. Alex Dehgan, Dr. Sylvia Earle (aka Her Deepness), Dr. Daniel Pauly, and Dr. Janet Coffey. During the panel we talked about the importance of the ocean and how little we know about it. The oceans play a central role is supporting human life. Yet we’ve mapped less of the ocean floor at high resolution than the surface of Mars, Venus, and the Moon combined. We have limited information about the changes that coastal ecosystems like coral reefs, mangroves, and giant kelp have been experiencing in recent decades. Citizen science provides a powerful method for collecting data that will allow us to better understand and protect these critical ecosystems.
It’s been a bit since I promised calibration info, but we’ve hit a minor (almost solved) projection issue in comparing our data to some gold-standard data we have. So, to stave off boredom while the real geographers on our team do the heavy lifting, I’ve been futzing about with making the generation of overall indices easier. I arrived at a neat solution using Spatial Grids in R that was much faster than switching back and forth between rasters. The biggest bonus is that the default plotting of results with color as number of people selecting an area is *purty!*
Or at least, I think so.
How does this kelp forest look to you?
Well, I woke up this morning, fired up Floating Forests, as is my wont, and saw this! I thought it would be a few more days, and was even going to post some exhortation, but you guys have been too awesome and brought us to 2 million classifications yourself!
Nice work, all! And now it looks like we’re going to need to throw some new regions your way soon!
A lot of what we’ll be working on to determine area of beds are heatmaps of users selecting a pixel as kelp. This sounds somewhat abstract, so I wanted to operationalize it for you with some images. Let’s start with a single image from Floating Forests chosen because it has been flagged as having kelp. It has 13 classifications, so, one more and it is ‘complete’ – unless we decide to lower the classification threshold. The image is
So, what would it look like if we overlaid all of the outlines of users outlining kelp from the other day on the image?
You can see, to some extent, folk circling the same areas, and their varying degrees of specificity. What does this result in if we want a heatmap of number of users selecting each pixel on which to do our analysis? Well, here you go!
Next time, a more quantitative look.
For the next post or three, I’m going to talk about what I see when I look at the data from one image. In the coming weeks, I hope to get at putting together bigger spatial or temporal results. But for the moment, I’m going to begin with what we see when we look at user classifications of one image. I’m going to begin with something beautiful – human variation.
This is the variability from person to person that we see in circling the same set of beds. I just find it striking and lovely.
Well, we’ve finally hit a critical mass of classifications (well, blown past it) and other projects by science team members have boiled down (we’ll be posting about them – they’re kelpy!), so we’ve begun to dig into the data. For anyone who wants to follow along at him, all code that we talk about will be posted in this github repository.
I thought I’d begin by telling you all about how *you* have been interacting with Floating Forests. Namely, how much effort do the ~5,100 users of FF put into FF the project
Many Zooniverse projects do well from a lot of people doing just a few images each. We’re no different. We have a nice distribution of folk with many doing few images (~1,500 have done just one classification), but with a looong tail with many users in the 100 to 1000 range. See below, but note the log10 scale on the x-axis.
The average user, though, does ~125 classifications. If we put it together and look at the cumulative percentage of classifications done by users who classify different numbers of images, we see that ~25% is done by those users who classify less than ~250 images. So, our ‘super-users’ are incredibly important! Heck, we have one users who has contributed 5.15% of the classifications. The top 10 have contributed 18% of classifications.
It may still be difficult to see just how much those users are doing in comparison to users classifying only a few images. So, we’ve done what many other zooniverse projects have done, made a treemap!
It’s not only incredibly informative – with the size of each square being proportional to the contribution of an individual users – but, oh, pretty data! Enjoy!